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rs228314396 SNP Detail
Summary
  • ID
    rs228314396
  • Variation Type
    SNP
  • Alleles
    T
Genome Location and Flanking Sequence
  • Location
    Chr4:135680633 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          CTTTT AACAGCACCA CTCCCTGGGC
    T
    GAGCATATAC AAACCATCCC AGAAT                                      
    
    T = T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
LG/J
SM/J
ss321353578 CHEV_4_135509237 CHEVERUD SCREENING_POP f SNP T T
SNP Consensus Information
SNP Consensus Type
LG/J
SM/J
rs228314396 SNP T T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr4:135680633 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Hmgcl 3-hydroxy-3-methylglutaryl-Coenzyme A lyase Intron
mRNA-UTR
Noncoding-Transcript-Variant
Noncoding-Transcript-Variant
Rr398602 regulatory region 398602 981 bp upstream
Rr602216 regulatory region 602216 1620 bp distal
Rr602217 regulatory region 602217 within coordinates
Rr602218 regulatory region 602218 1016 bp proximal
Rr602219 regulatory region 602219 1117 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory