rs228311607 SNP Detail

Summary

• ID
  rs228311607
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:16109918 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CGCCAGCGG CCAGAGGGCA GGCCGAGGCC
  GCCATATTCT CGCCGACCAC GCCCCGGCAG CCCAGCGGCA GCCGAAGGTC GGTGTCCGCC
  TGCCGGACCC GCTCCAACGG CCGTGACCGC CGCGCCGGAG CTCGCACAGA GGGAGGCGGC
  S
  GGCGAGCGGG GCGGGCAGTC GGGGGCGGGG CGAGGAGAGC GCGAGCTGTC CAGGAGGGGC
  CGCGGTcccg ccccttgcgc tgtgcccgcc ccctgcgccc gtcctcctcc tcctcctccc
  gccgccgccg ccccctcccG GATCTGTGCT                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325724222	CHEV_19_16207044	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228311607					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:16109918 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10651	CpG island 10651	within coordinates
Gnaq	guanine nucleotide binding protein, alpha q polypeptide	277 bp upstream
Rr544688	regulatory region 544688	1296 bp distal
Rr544689	regulatory region 544689	within coordinates
Rr544690	regulatory region 544690	46 bp proximal
Rr544691	regulatory region 544691	125 bp proximal
Rr544692	regulatory region 544692	288 bp proximal
Tssr155379	transcription start site region 155379	108 bp upstream
Tssr155380	transcription start site region 155380	192 bp upstream
Tssr155381	transcription start site region 155381	220 bp upstream
Tssr155382	transcription start site region 155382	258 bp upstream
Tssr155383	transcription start site region 155383	568 bp upstream
Tssr155384	transcription start site region 155384	747 bp upstream