rs228289084 SNP Detail

Summary

• ID
  rs228289084
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:119305986 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CCAACACAC ACGGGGTTGC TCTGTGCCGC
  TGAAGAAGCC ATTGAGGACC CGGGAGGCTC CCACCATTCA ACTGCCTCCC TGGGCAGGTG
  CCAAGGAAGA TCACTCACTC CACACCCAAG CCTCATCCTG GCTCCCCGCT CTTCCCAGCc
  T
  cacacacaca cacacacaca cacacacaca cacacacaca cacaATCACC CATTCCAGCG
  CCTTCCTTTG CCACCCACCT GACTAAAGCA AGACCCTGAC TCTGGGTCTT GGCACTTGGA
  AAATGAGACT AGGGTAAGCT TGTCCTGAGC                                 
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321927680	CHEV_6_119279043	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228289084					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:119305986 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cacna2d4	calcium channel, voltage-dependent, alpha 2/delta subunit 4			Intron
				Noncoding-Transcript-Variant
Cpgi17908	CpG island 17908			1316 bp proximal
Lrtm2	leucine-rich repeats and transmembrane domains 2			Intron
				Noncoding-Transcript-Variant
Rr637632	regulatory region 637632			within coordinates
Rr637633	regulatory region 637633			169 bp proximal
Rr637634	regulatory region 637634			244 bp proximal
Rr637635	regulatory region 637635			1722 bp proximal
Tssr62703	transcription start site region 62703			1543 bp downstream
Tssr62704	transcription start site region 62704			1568 bp downstream
Tssr62705	transcription start site region 62705			1643 bp downstream
Tssr62706	transcription start site region 62706			1675 bp downstream
Tssr62707	transcription start site region 62707			1698 bp downstream
Tssr62708	transcription start site region 62708			1781 bp downstream