rs228288173 SNP Detail

Summary

• ID
  rs228288173
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:113599514 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTCAAGAGA ATTTAGAAGC
  CCTGGAGAGC TGACTCAGTG GTTAAGAGCA CTGGTTGCTC TCACAGAGGA CCTGGGTTCA
  ATTCCCAGTT CCCACAACAG GCAGCTCACA GCGACTTCTG ACTCCAGCTC CAGGAAATCC
  AATCCTCCCT GTGTTCATCA GCCCCTGGAT GAGCTCACAC ATGCACACCC GTACATTTTT
  W
  ATTTTTTGTT TATTTATTTA CTTTGGTTTT TTGGGTTTTT GAGACAAGGT TTCTCTGTCT
  GTCCTGGAAC TCACTTTGTA GACCAGGCTG GCCTCGAACT CAGAAATCCT CCTGCCTCTG
  CCTCCCAAGT GCTGGGATTA AAGGCGTGCG CCACCACTGC CCGGCCCGTA CATTTAAAAA
  AAGCTCATCT GATGAAACTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321911135	CHEV_6_113572547	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228288173					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113599514 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17851	CpG island 17851	1118 bp proximal
Rr636555	regulatory region 636555	1028 bp proximal
Tssr58233	transcription start site region 58233	1435 bp upstream
Tssr58234	transcription start site region 58234	1495 bp upstream
Tssr58235	transcription start site region 58235	1573 bp upstream
Tssr62461	transcription start site region 62461	975 bp downstream
Vhl	von Hippel-Lindau tumor suppressor	1441 bp upstream