rs228264731 SNP Detail

Summary

• ID
  rs228264731
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:117653904 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCACGTGCTT CTGCCCCGCC
  TCCCCTGAGG TCATTTCAAG GGTATTCTGA TCACTGAAAC ACAGCTCTGT GCTTTAATAG
  CTCGAGCAAT TACCAGACAA TTACCCAGGG GTTCCTGTGC CCCTTCTTCC CCCCCCCCCA
  CCCCCGAACT TTCTTGGCTT TCTTTAGAGT CCTGGATAAA CCTTAAAACC TTTTGGTTAA
  R
  TTCTAAAAAG AAGCCCTGGA ACAATCTGTC TGTCTGTCTG TCTGTCTGTC TGCCTGCCTG
  TCGCTGGGAA GAACAGAAGC TGCACCACCC TGTGTTTTCT TCCTGGACCC TTCAGCAGTT
  TTATGCTTCA ATCACTGTTT TCCTCTGCTT CCTATTGGTT CTGAGCCATC TTGTTTAAAG
  GAACCTGAAA ATGGGATTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321922997	CHEV_6_117626961	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228264731					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:117653904 () rs orientation: forward

Symbol	Name	Function Class
Rr637348	regulatory region 637348	1214 bp distal
Rr637349	regulatory region 637349	1331 bp distal
Rr637350	regulatory region 637350	1292 bp distal
Rr637351	regulatory region 637351	96 bp distal
Rr637352	regulatory region 637352	68 bp proximal
Rr637353	regulatory region 637353	1368 bp proximal
Tssr1979	transcription start site region 1979	1755 bp upstream