rs228246961 SNP Detail

Summary

• ID
  rs228246961
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:141305463 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAATTAGAG CAGTGTTTAT
  GTTGCCCTAG TCTTATGGGC TAAGGCAATT AAATCATTTA TGGAATCAGT CATGAATTGT
  AAATTTTTCA GGCATCAGAA GTTAGAGGGA GAGGTGTATA AATTCTCATT TTTTGGTTAG
  ATCTTGCCAA ATGCAACTTC TTCTAATATA GCATACACAG TGTATTAATT TACCCAACAA
  Y
  CCTTTGTCAC ACATCCATTA ATGTGTGCCA GGCACAATTC TCAGAACTTG CAGAACAACT
  ACAAAATGAA GGTCAGTTCC TTCAATGGCG GATACTCTAA AGCACAGGGA AAAGCAAGGT
  AAGATGACAA TAATGGGTGA AAAGAAAAGA AAGCCTTGAA AAACTACTGA TCCACAGTTA
  GGACCTCTAT GTGTGGAGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320993682	CHEV_3_141262666	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228246961					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:141305463 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr586341	regulatory region 586341			1232 bp proximal
Unc5c	unc-5 netrin receptor C			Intron
				Noncoding-Transcript-Variant