rs228195594 SNP Detail

Summary

• ID
  rs228195594
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:110253475 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGATATGT AGCTGTCCTC
  CCCTTTTACC TCCTCCAACT CCCTCCTCCC CTACCCCCCC CCCAGCATCC TCAACACGTC
  CCCTCCCCCA CCTCATGTCT TCTCTGAGTC CTGTTAGCGC CACCGGTTGC AAAGCTGACT
  GATCTTGTGG ACTTGTCCAG GGAACCACAT CTGCAAGTGA GTCCACAGAT GCAGAGGCCA
  Y
  ACTATGTTCA GAAGACAGTT TCAGAGCGCT CTATCCTGTC CATCCCTCTT CTGTGATGCC
  CCTGAGACTT GGGTGGGGCA TGTGTGATAC AGATGACCCA CTTAGGACTG AGCACGTGGT
  AGACACCCAC CCTCAGCACT CTGACCAATT ATGAATATCT GCACTAACAC TGATCTCTGT
  GGATGTGAAT TAAAGGCGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378902826	MGP_WTSI_9_110326911	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs228195594					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378902826	MGP_WTSI_9_110326911	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:110253475 () rs orientation: forward

Symbol	Name	Function Class
Klhl18	kelch-like 18	1519 bp downstream
Ngp	neutrophilic granule protein	1395 bp downstream
Tssr3025	transcription start site region 3025	1918 bp upstream
Tssr3026	transcription start site region 3026	1869 bp upstream
Tssr3027	transcription start site region 3027	1772 bp upstream
Tssr3028	transcription start site region 3028	1706 bp upstream
Tssr3029	transcription start site region 3029	1690 bp upstream
Tssr3030	transcription start site region 3030	1679 bp upstream
Tssr3031	transcription start site region 3031	1487 bp upstream
Tssr87372	transcription start site region 87372	1963 bp downstream
Tssr87373	transcription start site region 87373	1923 bp downstream
Tssr87374	transcription start site region 87374	1901 bp downstream
Tssr87375	transcription start site region 87375	1878 bp downstream
Tssr87376	transcription start site region 87376	1872 bp downstream
Tssr87377	transcription start site region 87377	1858 bp downstream
Tssr87378	transcription start site region 87378	1807 bp downstream
Tssr87379	transcription start site region 87379	1762 bp downstream
Tssr87380	transcription start site region 87380	1545 bp downstream
Tssr91620	transcription start site region 91620	1973 bp upstream
Tssr91621	transcription start site region 91621	1894 bp upstream
Tssr91622	transcription start site region 91622	1832 bp upstream
Tssr91623	transcription start site region 91623	1397 bp upstream