rs228189809 SNP Detail

Summary

• ID
  rs228189809
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:13840865 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATTTTGGC AAAAAGCATA
  GGGCTAACTA ATCTTATACT TTTTTTTTTT AATCTTTTTT TCTTTTCTTT TTTTGAGACA
  AGGTTTCTCT GTGTAGCCCT GGCTGTCCTG GAACTCACTT TGTAGACCAG GCTGGCCTCA
  AACTCAGAAA TCTGCCTGCC TCTGCCTCCC GAGTGCTGGG ATTAAAGGCG TGCGCCACCA
  Y
  GCCCGGCTAA CTGATCTTAT ACTTTAAGAA GCATATATTG GGGCTGATGA GATGCCTCAG
  GGAGTAAGAG CACTGACTGC TCTTCCGAAT GTCCGAATCC CAGCAAGCAG AGTTGAGCGG
  GGCTAACCGG AGCGAGCAGA GGATTTATAA ATTCAATTCC CAACTCACAC ACACAAAATA
  AAAATAATAA AATAAAAATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss367440179	MGP_WTSI_6_13790866	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs228189809					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367440179	MGP_WTSI_6_13790866	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:13840865 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17167	CpG island 17167	1686 bp distal
Gpr85	G protein-coupled receptor 85	924 bp upstream
Rr626595	regulatory region 626595	1922 bp distal
Rr626596	regulatory region 626596	504 bp distal
Tssr59846	transcription start site region 59846	1656 bp upstream
Tssr59847	transcription start site region 59847	1526 bp upstream
Tssr59848	transcription start site region 59848	1428 bp upstream
Tssr59849	transcription start site region 59849	1356 bp upstream
Tssr59850	transcription start site region 59850	1332 bp upstream
Tssr59851	transcription start site region 59851	958 bp upstream
Tssr59852	transcription start site region 59852	925 bp upstream