rs228159116 SNP Detail

Summary

• ID
  rs228159116
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:137690038 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCATT ACCACCCCAC CCACCACCCC
  C
  AGGTCTGGTG CTCTGTCCGC ACACC                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321369353	CHEV_4_137518642	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228159116					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137690038 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ece1	endothelin converting enzyme 1			Intron
				Splice-Site
Rr602797	regulatory region 602797			1490 bp distal
Rr602798	regulatory region 602798			1256 bp proximal
Rr602799	regulatory region 602799			1313 bp proximal
Rr602800	regulatory region 602800			1690 bp proximal
Tssr39801	transcription start site region 39801			1097 bp upstream
Tssr39802	transcription start site region 39802			1747 bp upstream