rs228143272 SNP Detail

Summary

• ID
  rs228143272
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:116724709 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TGTTAATAG TATGgataaa gatgacctgg
  tctaagatag tggcttctag gaaaatgaga aatgatgaag tcataagagt atttaaaaga
  gagaacttcc aggatttatt ggtagattat agattacagg tgagagagaa agggggaagG
  R
  GGAAgggagg cggaggggag aagggggagg gtgagggtga gggtgacggg gagggggagg
  gggaggggga gggggagagg gagagggaga gggagaggAT GCTGCCATTG TTAGGACCCG
  AGTAACTGGA AACCCACAAA TGTAACTGGT                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320896868	CHEV_3_116633978	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228143272					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116724709 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Palmd	palmdelphin			Intron
				Noncoding-Transcript-Variant
Rr583806	regulatory region 583806			1662 bp distal