rs228139859 SNP Detail

Summary

• ID
  rs228139859
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:113599656 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    caTTTTTAA TTTTTTGTTT ATTTATTTAC
  TTTGGTTttt tgggtttttg agacaaggtt tctctgtctg tcctggaact cactttgtag
  accaggctgg cctcgaactc agaaatcctc ctgcctctgc ctcccaagtg ctgggattaa
  R
  ggcgtgcgcc accactgccc ggcCCGTACA TTTAAAAAAA GCTCATCTGA TGAAACTTCT
  GCCAGAAATG TCTATGGAAA AATGGCACTG AATGTTATCT GATAGTAGTT GTATGCTAAT
  TCTTTGaacc agtcatggta gcacatatct                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321911138	CHEV_6_113572689	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228139859					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113599656 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17851	CpG island 17851	976 bp proximal
Rr636555	regulatory region 636555	886 bp proximal
Tssr58233	transcription start site region 58233	1293 bp upstream
Tssr58234	transcription start site region 58234	1353 bp upstream
Tssr58235	transcription start site region 58235	1431 bp upstream
Tssr58236	transcription start site region 58236	1972 bp upstream
Tssr62461	transcription start site region 62461	833 bp downstream
Vhl	von Hippel-Lindau tumor suppressor	1299 bp upstream