rs228137754 SNP Detail

Summary

• ID
  rs228137754
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:116483759 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGTATGGA AAATAACTTC
  TTTCCTCGAA CTGATGAATG CTTCTGTGCA TATGGGAGAG ATCAAGTTAG ATTAGCACTT
  TAAAGCTCTC AAATCAAGCA TTCCTCCTTT GGGGTCCTTT CGCTTAGCAA ACTCATCTAG
  CAAGTAAACA CTAGACTGAT AGCTACATAC AGCCTTTACC GAAGACACTA CGCAAGTAAA
  R
  TGTCCCTTGA AGCAACAAAA TCCCCGTCCC ACATACCGAA AACCTAACGA ATCAAGACAC
  TTCTCCGCAA AGGTTAAGAG TTACAAAGCT TCAGTCCCGT AGCCACCCTC AAGATTACTG
  TAAACCTGGT AGTGAGTATA TAATAAAATT CATTGCGCCC CACCGACCCG GCAAAAGCAG
  CATCCACTCC AAACAATGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss362953139	MGP_WTSI_4_116299167	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G	G	A	A	G	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs228137754					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G	G	A	A	G	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362953139	MGP_WTSI_4_116299167	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:116483759 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
A430091L06Rik	RIKEN cDNA A430091L06 gene			281 bp upstream
Cpgi14636	CpG island 14636			150 bp proximal
Nasp	nuclear autoantigenic sperm protein (histone-binding)			Intron
				Noncoding-Transcript-Variant
Rr398403	regulatory region 398403			137 bp upstream
Rr398404	regulatory region 398404			832 bp upstream
Rr398405	regulatory region 398405			1301 bp upstream
Rr597936	regulatory region 597936			within coordinates
Rr597937	regulatory region 597937			204 bp proximal
Rr597938	regulatory region 597938			906 bp proximal
Tssr42894	transcription start site region 42894			805 bp downstream
Tssr42895	transcription start site region 42895			924 bp downstream
Tssr42896	transcription start site region 42896			1334 bp downstream
Tssr42897	transcription start site region 42897			1359 bp downstream
Tssr42898	transcription start site region 42898			1410 bp downstream