rs228132161 SNP Detail

Summary

• ID
  rs228132161
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:28076144 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGGGACGG AAACATCCCG
  TTCCTGCCCG AGCTGGGTCA AGAGCCGGAG GGACAGGACC AGAGCACCCC TTACGCCAGA
  ACTAGCTCTC CTTGTTCCTA CTGGGTGACC TCATCTCGCC ACGCCTCCTC AGGTGAACAC
  CCGGGCTGGT AACGTCACTT CCTGCCAGGT AAGCGCCCCC AGGCAGCACT GCTCACGGAA
  W
  GGTCTGGAGG TCAGTTTACC CACCATCACA AGGCTGTGAG CCGCGAAAAA GACAAATTTC
  ATCTCAGTTC ACACTCAAGA TTTTATTTAA AAATTCCAAC CCCCCCCAAA AAATAGACTT
  GTACGGTAGC AATATATTAA TATATTATAG CATATACTTA ATACAGTATC AGTTTTAACA
  TTACAAAAAG AAAAACGGAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370858505	MGP_WTSI_7_29161738	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs228132161					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370858505	MGP_WTSI_7_29161738	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:28076144 () rs orientation: forward

Symbol	Name	Function Class
Gm73785	predicted gene, 73785	45 bp upstream
Gm73803	predicted gene, 73803	1147 bp upstream
Rr380568	regulatory region 380568	within coordinates
Rr400209	regulatory region 400209	787 bp downstream
Rr644238	regulatory region 644238	657 bp distal
Rr644239	regulatory region 644239	within coordinates
Rr644240	regulatory region 644240	1214 bp proximal
Rr644241	regulatory region 644241	1771 bp proximal
Tssr65460	transcription start site region 65460	927 bp downstream
Tssr65461	transcription start site region 65461	156 bp downstream
Tssr65462	transcription start site region 65462	7 bp upstream
Tssr65463	transcription start site region 65463	767 bp upstream
Tssr65464	transcription start site region 65464	1277 bp upstream
Tssr71489	transcription start site region 71489	1135 bp upstream
Tssr71490	transcription start site region 71490	251 bp downstream
Tssr71491	transcription start site region 71491	355 bp downstream
Tssr71492	transcription start site region 71492	411 bp downstream
Tssr71493	transcription start site region 71493	455 bp downstream
Tssr71494	transcription start site region 71494	502 bp downstream
Tssr71495	transcription start site region 71495	547 bp downstream
Tssr71496	transcription start site region 71496	898 bp downstream
Tssr71497	transcription start site region 71497	1146 bp downstream
Tssr71498	transcription start site region 71498	1204 bp downstream
Tssr71499	transcription start site region 71499	1297 bp downstream
Tssr71500	transcription start site region 71500	1330 bp downstream
Tssr71501	transcription start site region 71501	1348 bp downstream
Tssr71502	transcription start site region 71502	1388 bp downstream
Tssr71503	transcription start site region 71503	1424 bp downstream
Tssr71504	transcription start site region 71504	1452 bp downstream
Tssr71505	transcription start site region 71505	1468 bp downstream
Tssr71506	transcription start site region 71506	1487 bp downstream
Tssr71507	transcription start site region 71507	1528 bp downstream
Tssr71508	transcription start site region 71508	1550 bp downstream
Tssr71509	transcription start site region 71509	1588 bp downstream
Tssr71510	transcription start site region 71510	1667 bp downstream
Tssr71511	transcription start site region 71511	1706 bp downstream
Tssr71512	transcription start site region 71512	1761 bp downstream
Zfp36	zinc finger protein 36	64 bp downstream