rs228130340 SNP Detail

Summary

• ID
  rs228130340
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:144112277 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCGG GAACCTCCAG CCCAGGTAGC
  R
  AGCGAGGAAG GGATCTCACC TTGCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320535409	CHEV_2_144096093	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228130340					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:144112277 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12351	CpG island 12351			within coordinates
Mgme1	mitochondrial genome maintenance exonuclease 1			547 bp upstream
Rr397362	regulatory region 397362			394 bp upstream
Rr397363	regulatory region 397363			1059 bp upstream
Rr566424	regulatory region 566424			845 bp distal
Rr566425	regulatory region 566425			within coordinates
Rr566426	regulatory region 566426			205 bp proximal
Rr566427	regulatory region 566427			595 bp proximal
Snx5	sorting nexin 5			Intron
				Noncoding-Transcript-Variant
Tssr20524	transcription start site region 20524			217 bp upstream
Tssr20525	transcription start site region 20525			265 bp upstream
Tssr20526	transcription start site region 20526			521 bp upstream
Tssr20527	transcription start site region 20527			654 bp upstream
Tssr20528	transcription start site region 20528			1271 bp upstream
Tssr26594	transcription start site region 26594			289 bp upstream
Tssr26595	transcription start site region 26595			83 bp downstream
Tssr26596	transcription start site region 26596			147 bp downstream
Tssr26597	transcription start site region 26597			423 bp downstream
Tssr26598	transcription start site region 26598			479 bp downstream
Tssr26599	transcription start site region 26599			495 bp downstream