rs228127671 SNP Detail

Summary

• ID
  rs228127671
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135622408 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    tgtagccct gaatgtccta gaatttgcta
  tgtagaccaa gctggccttg aactgcctct gcctcccgag tgctggaact aaaggtgtgt
  gtcatcatgc ccagctTCTG AACTTGCTTT TGTCACAGTC ACAGAATGGA GCAGAACCAG
  R
  AGCCAGCAGC GTTCATTCAT GTCATCTGCC AACACCTGCA GGCATTTGCA TCTCAAAGCT
  CTGGGCGAGA GGGAGGAGGc atgaggcaca cacatagcct ggcacatgtc acagacaaaa
  ggatgtaaac tttacagagg tcaagtgagt                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321353449	CHEV_4_135451012	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228127671					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135622408 () rs orientation: forward

Symbol	Name	Function Class
Cnr2	cannabinoid receptor 2	297 bp upstream
Rr602181	regulatory region 602181	1948 bp distal
Rr602182	regulatory region 602182	1632 bp distal
Rr602183	regulatory region 602183	within coordinates
Rr602184	regulatory region 602184	308 bp proximal
Rr602185	regulatory region 602185	874 bp proximal
Rr602186	regulatory region 602186	1775 bp proximal
Rr602187	regulatory region 602187	1898 bp proximal
Rr602188	regulatory region 602188	1926 bp proximal
Tssr39650	transcription start site region 39650	83 bp upstream
Tssr39651	transcription start site region 39651	287 bp upstream
Tssr39652	transcription start site region 39652	317 bp upstream