rs228117544 SNP Detail

Summary

• ID
  rs228117544
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:82937588 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATACTTATAA GCAATTTCCT
  TTTTCTTTTT TTATTTATTT GTTTTTAGAT TTTAGAAGTA AATCAGACTG CAGCTATTTG
  CATACCTTTC TTTTTCCGTT TCAGACTTTG ATAACACTTA TGGGCAAGTG TCAGAAGACC
  TGAGGCGCAG AATTGAGATC CTGAGGCGAA AAGTCATAGA GAAAGCGCAA CAGATTCAAG
  Y
  TCTGCAGAGC AATGTCCGGG CTCAGTTGAT AGACATGAAG CGCCTGGAGG TAAGCCTGGC
  CCTGGCCCCA GTTTATCTCT GACTAAGAAA GACAGAAGAC ACTAGCTGCC TGTGTAGAGT
  CTACTAAATC TATTATCCAT TCAGAATAGA AGTGTCTCAC CCTAGAGAAG ACTTAAGTCC
  GGAAATGCGA AGGAAATTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358676684	MGP_WTSI_3_82834203	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs228117544					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358676684	MGP_WTSI_3_82834203	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:82937588 () rs orientation: forward

Symbol	Name	Function Class
Fga	fibrinogen alpha chain	Coding-NonSynonymous
Rr375250	regulatory region 375250	within coordinates
Tssr917	transcription start site region 917	1417 bp upstream
Tssr29661	transcription start site region 29661	1733 bp downstream
Tssr29662	transcription start site region 29662	1684 bp downstream
Tssr29663	transcription start site region 29663	1667 bp downstream
Tssr29664	transcription start site region 29664	1184 bp downstream
Tssr29665	transcription start site region 29665	1145 bp downstream
Tssr29666	transcription start site region 29666	1109 bp downstream
Tssr29667	transcription start site region 29667	1066 bp downstream
Tssr29668	transcription start site region 29668	72 bp downstream
Tssr29669	transcription start site region 29669	22 bp downstream
Tssr29670	transcription start site region 29670	5 bp upstream
Tssr29671	transcription start site region 29671	549 bp upstream
Tssr29672	transcription start site region 29672	652 bp upstream
Tssr29673	transcription start site region 29673	680 bp upstream
Tssr29674	transcription start site region 29674	729 bp upstream
Tssr29675	transcription start site region 29675	739 bp upstream
Tssr29676	transcription start site region 29676	749 bp upstream
Tssr29677	transcription start site region 29677	766 bp upstream
Tssr29678	transcription start site region 29678	845 bp upstream
Tssr29679	transcription start site region 29679	889 bp upstream
Tssr29680	transcription start site region 29680	912 bp upstream
Tssr29681	transcription start site region 29681	1014 bp upstream
Tssr29682	transcription start site region 29682	1037 bp upstream
Tssr29683	transcription start site region 29683	1080 bp upstream
Tssr29684	transcription start site region 29684	1105 bp upstream
Tssr29685	transcription start site region 29685	1146 bp upstream
Tssr29686	transcription start site region 29686	1212 bp upstream
Tssr29687	transcription start site region 29687	1310 bp upstream
Tssr29688	transcription start site region 29688	1334 bp upstream
Tssr29689	transcription start site region 29689	1360 bp upstream
Tssr29690	transcription start site region 29690	1390 bp upstream
Tssr29691	transcription start site region 29691	1436 bp upstream
Tssr29692	transcription start site region 29692	1452 bp upstream
Tssr29693	transcription start site region 29693	1483 bp upstream
Tssr29694	transcription start site region 29694	1516 bp upstream
Tssr29695	transcription start site region 29695	1542 bp upstream
Tssr29696	transcription start site region 29696	1555 bp upstream
Tssr29697	transcription start site region 29697	1579 bp upstream
Tssr29698	transcription start site region 29698	1716 bp upstream
Tssr29699	transcription start site region 29699	1798 bp upstream
Tssr29700	transcription start site region 29700	1811 bp upstream
Tssr29701	transcription start site region 29701	1843 bp upstream
Tssr33800	transcription start site region 33800	821 bp downstream
Tssr33801	transcription start site region 33801	1166 bp downstream
Tssr33802	transcription start site region 33802	1302 bp downstream