rs228115018 SNP Detail

Summary

• ID
  rs228115018
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:139301880 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCAATGGGTT GAGGGGCGTG GCCTATGTCC GCAGAGGGCG
  GTCCAGGCTA GGGAGGAAGG CCTTCGCCTA TAGAGGGCGG GCCGGGAAGG GCAGAGAGCA
  K
  CTAGGCAGGG GGTGTGGTCT GTGTCTGCAG AGGGCGGGCC CTGGAGGCGT GGTCTGTGCC
  TGCAGAGGGC GGGGCTCGCC GCAGAGGGGG CAGCGCCGG                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321382466	CHEV_4_139130484	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228115018					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:139301880 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15171	CpG island 15171	within coordinates
Iffo2	intermediate filament family orphan 2	Intron
Rr603244	regulatory region 603244	within coordinates
Rr603245	regulatory region 603245	17 bp distal
Rr603246	regulatory region 603246	55 bp proximal
Tssr39955	transcription start site region 39955	75 bp upstream
Tssr39956	transcription start site region 39956	128 bp upstream