rs228054170 SNP Detail

Summary

• ID
  rs228054170
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:113600643 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    aaaaaaaaa aaAAAAAAAA ATCCAACTgc
  ccttggtccc tgttctctgg agtctgaggc agggagatct ttgagttcag gacaagccgg
  atatacataa tgagttctag gcctacatag tgagacccta cctcaaaGCA AGTCTTTCTg
  R
  catggagata acggctttaa tcccagtact ctggaagcag aggcaggcag atctccgaga
  gttcgaggcc agactgatct agggtgtgag ttccaggaca gccaggatta cacgaagaaa
  ctctatcttg ggggaaaaaa aaaaaaGAAG                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321911155	CHEV_6_113573676	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228054170					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113600643 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17851	CpG island 17851	within coordinates
Rr636555	regulatory region 636555	within coordinates
Tssr58233	transcription start site region 58233	306 bp upstream
Tssr58234	transcription start site region 58234	366 bp upstream
Tssr58235	transcription start site region 58235	444 bp upstream
Tssr58236	transcription start site region 58236	985 bp upstream
Tssr62461	transcription start site region 62461	150 bp upstream
Vhl	von Hippel-Lindau tumor suppressor	312 bp upstream