rs228051564 SNP Detail

Summary

• ID
  rs228051564
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:15791648 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTTG ATGCTATCAT TCCCCCACCC
  Y
  ATCGGGCACT ACTACCACAA CTCCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321752332	CHEV_6_15741649	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228051564					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:15791648 () rs orientation: forward

Symbol	Name	Function Class
Mdfic	MyoD family inhibitor domain containing	Intron
Rr399575	regulatory region 399575	1185 bp downstream
Rr399576	regulatory region 399576	1736 bp upstream
Rr626687	regulatory region 626687	1093 bp distal
Rr626688	regulatory region 626688	1333 bp distal
Rr626689	regulatory region 626689	960 bp proximal
Tssr55016	transcription start site region 55016	1877 bp upstream
Tssr55017	transcription start site region 55017	1912 bp upstream
Tssr59879	transcription start site region 59879	1671 bp downstream