rs228049978 SNP Detail

Summary

• ID
  rs228049978
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:95903016 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGAGA CGAGGAGCGG CGGCTCAGAC
  K
  GGTCTCTGCG CCCTCCCCGC CCCCC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320841342	CHEV_3_95799627	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228049978					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95903016 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13533	CpG island 13533			within coordinates
Gm9052	predicted gene 9052			287 bp upstream
Gm65578	predicted gene, 65578			1399 bp downstream
Plekho1	pleckstrin homology domain containing, family O member 1			Coding-NonSynonymous
				Intron
Rr581114	regulatory region 581114			1204 bp distal
Rr581115	regulatory region 581115			1697 bp distal
Rr581116	regulatory region 581116			within coordinates
Rr581117	regulatory region 581117			1616 bp proximal
Tssr30672	transcription start site region 30672			1662 bp downstream
Tssr30673	transcription start site region 30673			1582 bp downstream
Tssr30674	transcription start site region 30674			281 bp upstream
Tssr30675	transcription start site region 30675			402 bp upstream
Tssr30676	transcription start site region 30676			441 bp upstream
Tssr34577	transcription start site region 34577			1985 bp upstream
Tssr34578	transcription start site region 34578			45 bp upstream
Tssr34579	transcription start site region 34579			12 bp upstream
Tssr34580	transcription start site region 34580			within coordinates
Tssr34581	transcription start site region 34581			87 bp downstream
Tssr34582	transcription start site region 34582			106 bp downstream
Tssr34583	transcription start site region 34583			131 bp downstream
Tssr34584	transcription start site region 34584			232 bp downstream
Tssr34585	transcription start site region 34585			295 bp downstream
Tssr34586	transcription start site region 34586			1608 bp downstream