rs228028518 SNP Detail

Summary

• ID
  rs228028518
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:54476126 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ACCCTGCTC CTAAGCATGC AATGGTCTTC
  TGGTTGTCTG CCTGCCTGCC CTGCTGTTGG TGGTACTGAC ATTAAATACA CTGCCTCTCT
  CTTTTAGGTA GCAGGCTCCT CTAGAGACAA ACTGCTGTAT TTATAAACCT TCAAAATATC
  Y
  TTCTCTTTTT TTCTAAAATT TTCTGACATA AGTTGACCAT GCCCTTACTC ACCACATGCT
  CTTGAACATG TTCTGACATC TGGAACAAAG TATGCCCAAA GATGTGGCCT TCCTTTTTCT
  TTCTTGAGCT AGGACCTCAA AGCAGAGCGC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320771945	CHEV_3_54372627	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228028518					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:54476126 () rs orientation: forward

Symbol	Name	Function Class
Rr576807	regulatory region 576807	977 bp distal
Rr576808	regulatory region 576808	311 bp distal
Rr576809	regulatory region 576809	1976 bp proximal
Tssr29130	transcription start site region 29130	1192 bp upstream