rs228007862 SNP Detail

Summary

• ID
  rs228007862
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:156955291 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAGTCAGGAA TGATGGAACA CACCTTTAAT CCCATCACTC
  CAGAGGCAGA GGCAGGAAGA TCTCTGAGTT TGAGACCGGT CTGAATTACA CAGCAAGATC
  Y
  AGACAGCAAG GACTACAAAG TGAAACTCTG TCTCAAAAAA AAAAAAAAAA AAAAAAAAAA
  AAAAAAAAAT CTTCAAGCAA TTGCAGAGTG CTTTTAGGT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320584231	CHEV_2_156939107	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228007862					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156955291 () rs orientation: forward

Symbol	Name	Function Class
Rr568435	regulatory region 568435	1568 bp proximal
Samhd1	SAM domain and HD domain, 1	Intron
Tssr27139	transcription start site region 27139	1671 bp upstream
Tssr27140	transcription start site region 27140	836 bp upstream
Tssr27141	transcription start site region 27141	507 bp upstream
Tssr27142	transcription start site region 27142	31 bp downstream
Tssr27143	transcription start site region 27143	906 bp downstream