rs228003206 SNP Detail

Summary

• ID
  rs228003206
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:110145468 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TGACCAACA TTTCAAAAGC ATTCAAGTTT
  GGGATTAAGC TTGTTGAGTG AATTGGGTTC ACAACTTTGC CTTAAAAACT ATTTCCTAAG
  AGTTTaagaa agaaagaaag aaagaaagaa agaaagaaag aaagaaagaa aggaaggaag
  R
  aaggaaggaa agaaaAGCTG GGGGAAGGAG GAGGGCCACT GTCAGCTTCT ACCTTTCTGT
  CTTCTATGTG AGCTTTCTAC GACAGAGAAG GGTGAATGAT TTATTTAAAT GAATTTATTT
  TCCAACTTAG GGGCATGCTC TGCATTTAAA                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321255937	CHEV_4_109960876	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228003206					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:110145468 () rs orientation: forward

Symbol	Name	Function Class
Elavl4	ELAV like RNA binding protein 4	Intron
Rr597418	regulatory region 597418	1393 bp distal
Rr597419	regulatory region 597419	892 bp distal
Rr597420	regulatory region 597420	254 bp distal
Rr597421	regulatory region 597421	1991 bp proximal
Tssr42786	transcription start site region 42786	1741 bp upstream
Tssr42787	transcription start site region 42787	1654 bp upstream
Tssr42788	transcription start site region 42788	1630 bp upstream
Tssr42789	transcription start site region 42789	1385 bp upstream
Tssr42790	transcription start site region 42790	737 bp upstream