rs227988333 SNP Detail

Summary

• ID
  rs227988333
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:107557751 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCCTGAAA TCTCATATGT
  AATGATGCTA TTTTTACAAG AATATTTTCA CATGTATCTT GCTAAGTATA AAAGACCAGT
  AAGATACTGG GTGAACTGAA AAAGATGGAA GTGTTTCATT CATTTTATAT AAGATTATGG
  CATGCCTGTG GTGTGCAATC CCTCAAATTG GTCTCGGGGC CAAAATGTAT GAGGTCAGTA
  R
  GTCCATGCTG TTTGAGGAAT GGAGTCACTG GGACATTTAA CACTGTCAAG AACTCTGGAA
  ATTTAATTTT GAAAATATAT GATTAATACC CCTTTTCTCC CAGAACCTAC TGTAGGTAAA
  CAACGGCTCC AGCTGGTCAC CCTGGAGCTG CTGCCAGAGA CAATTCCTTC CAAAGAAAAG
  CAGGGAGACA TGTTCAAAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321250149	CHEV_4_107373159	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227988333					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107557751 () rs orientation: forward

Symbol	Name	Function Class
1700047F07Rik	RIKEN cDNA 1700047F07 gene	within coordinates
Gm70287	predicted gene, 70287	within coordinates
Rr597043	regulatory region 597043	572 bp proximal
Rr597044	regulatory region 597044	752 bp proximal