rs227986178 SNP Detail

Summary

• ID
  rs227986178
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:19364781 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTGCACAC TAGTTCCTGA
  CACCTAGGCC CCTTCCCTAC AAAGCAGCAG TTCGCAGTTC GGGTGAGGAC CACAATGGGA
  CCACTAGGCC TATTGTTCTG AGAAACTCAG CACCCGCAGC GCTGCAAGGC TCGAGAACCT
  GCACAGGTGT GGGGGAGGGC TAGGGGGTGG GGGGCGAAAA GGTGAGCTCA GGGTCATGAC
  W
  AAGGGGACAA GAGGCCCAAC TGGTAGGAGA CACAGAGAAA GGAGGGGAGG ATAAAGTCAT
  GGCTTGGGGC TACCAGCGGG CGTGACGGGT TAGCCGCGGC GAGGGTCGCA GAGGCCAGGG
  GCACCGAGCA CAGCCGAGGG TGAAAGACTC CGGGAAGGGG AGGCCAGCCT ACCGAGGCGG
  GAACAATGGC CCGAGTCCCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss357153115	MGP_WTSI_3_19210617	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227986178					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357153115	MGP_WTSI_3_19210617	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:19364781 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
3110037C07Rik	RIKEN cDNA 3110037C07 gene			265 bp upstream
Cpgi13002	CpG island 13002			within coordinates
Gm66414	predicted gene, 66414			1020 bp upstream
Pde7a	phosphodiesterase 7A			Intron
				Noncoding-Transcript-Variant
Rr573969	regulatory region 573969			within coordinates
Rr573970	regulatory region 573970			695 bp proximal
Rr573971	regulatory region 573971			1031 bp proximal
Tssr28510	transcription start site region 28510			75 bp upstream
Tssr28511	transcription start site region 28511			231 bp upstream
Tssr28512	transcription start site region 28512			823 bp upstream
Tssr28513	transcription start site region 28513			864 bp upstream
Tssr32696	transcription start site region 32696			626 bp downstream
Tssr32697	transcription start site region 32697			652 bp downstream
Tssr32698	transcription start site region 32698			716 bp downstream
Tssr32699	transcription start site region 32699			732 bp downstream
Tssr32700	transcription start site region 32700			772 bp downstream
Tssr32701	transcription start site region 32701			1575 bp downstream