rs227959374 SNP Detail

Summary

• ID
  rs227959374
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:22537201 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGTCTAAAA CAGCTACAAG
  TTATGGGATA TCCTTCCTAT ATTTAGGTAT GCGGCTTCAG TGCTGATCCA ACACATATAG
  ACATCTTTTG AGGGTTCTTG CAAGATATTG TTTCTTATTA AAAAGAGTAG CCCTTAGGAG
  GAAGGCCTTT TTGGTGACAT CCAACTTGCT TCCTTGTTTG AATACAATCA TGTGAGTATG
  Y
  AAAATTCAGA GCTGTGGAGG GCATGTTGCA ACCCCACATA CCACATAACA GAAATTTGAA
  AATAATTTTG TTCATGGACA GAGTGATCTA TGGAAATAAT GCTGGTTGCA TCCTCAGACT
  TTGTGCCCAA ATACTCACTA GCCTTCTGTT TTCAGTAGCT TTATCTGAGT GATGCCGATT
  AACCTTAAAT CATTCAAACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321765814	CHEV_6_22487202	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227959374					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:22537201 () rs orientation: forward

Symbol	Name	Function Class
Rr627119	regulatory region 627119	207 bp proximal
Rr627120	regulatory region 627120	263 bp proximal