rs227958189 SNP Detail

Summary

• ID
  rs227958189
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:109333823 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGCTAGGC CGCGGGCTGC
  GCCGGGGTCG CGTCTGGAAC CTGAGGGGGG CGGGGGCGGG AAGACTGAGC GCTTCCCCAC
  CCCGCCCCCC GCGGGGCGGC GGCGGCCACG GGCTGCTGGG CCTAATCCAG GTCAGGAGGG
  GGGGGCGCGG CCGTCTCGGT TGCCTCAGCT GCTGCCTCAG CTGCTGTTGC CCCTGCCGAC
  R
  CTGGAGCCGC GGCCCGGGGC CTCATCCTAC TCCGCCTCGG CGCGGCGGCG GTGGCCAGAA
  CGAGGCTGGC CAGGCCTACG TCATGCCGCC GTGCGTGCTC CGGCCCCGCC CCGGGCGCGC
  GCGTCCGACT CCTGGACTGC GTGGCTGGGC TCTGAGTTTA AGGTCCAGGC TGTGTGGCTG
  TTGGTCTCCC GACCATCTGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss362802677	MGP_WTSI_4_109149231	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227958189					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362802677	MGP_WTSI_4_109149231	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:109333823 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi14574	CpG island 14574			within coordinates
Rnf11	ring finger protein 11			Intron
				mRNA-UTR
Rr597332	regulatory region 597332			39 bp proximal
Rr597333	regulatory region 597333			203 bp proximal
Tssr38352	transcription start site region 38352			776 bp downstream
Tssr38353	transcription start site region 38353			725 bp downstream
Tssr42763	transcription start site region 42763			337 bp upstream
Tssr42764	transcription start site region 42764			189 bp upstream
Tssr42765	transcription start site region 42765			149 bp upstream
Tssr42766	transcription start site region 42766			130 bp upstream
Tssr42767	transcription start site region 42767			18 bp upstream
Tssr42768	transcription start site region 42768			within coordinates
Tssr42769	transcription start site region 42769			40 bp downstream