rs227944314 SNP Detail

Summary

• ID
  rs227944314
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:110148357 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGGTGGGT AGAGTGCTCA
  GATTGAAATA GAGTGGCTTA AAAGGTAGGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT
  GTGTGTGTGT GTGCGCTTTT TCCTTGGAAT TGCTTTTAGG TATAGGATGT GATGTGAGAC
  ACAGGCAAAT TTGTTCAAAT TTGTTTCTAC TGTATTATGT CTAAGTAAAT AATTTTCTTC
  Y
  TCTTGACTTA AAGCAAGGAG ACAAAACAGA ACAAGACACT ACCAAGCAAT TCTAACAAGA
  ACTGTGAAGA ATGGAGCACA AGCAAGACTT GTTTCATTCT GCAAATGATG AATGAGGGGG
  ATACAATTAA CCCTGAGAAA GGGAGAACTT AAAAAAGTCC ATGAAATTTT TTTTTTCTTT
  TTACAATGAG AGAAATATGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321255954	CHEV_4_109963765	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227944314					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:110148357 () rs orientation: forward

Symbol	Name	Function Class
Elavl4	ELAV like RNA binding protein 4	Intron
Rr597421	regulatory region 597421	398 bp distal
Rr597422	regulatory region 597422	822 bp proximal
Rr597423	regulatory region 597423	1552 bp proximal
Tssr42791	transcription start site region 42791	247 bp upstream
Tssr42792	transcription start site region 42792	228 bp upstream
Tssr42793	transcription start site region 42793	1341 bp downstream
Tssr42794	transcription start site region 42794	1559 bp downstream