rs227904224 SNP Detail

Summary

• ID
  rs227904224
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:50304738 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGAG AGGGAGAGGG AGAGGGAGAG
  R
  GAGAGGGAGA GAGAGAGAGA GAGAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C57BL/6J	C57BL/10J	C57BL/10SnJ	CE/J	I/LnJ	LG/J	NON/ShiLtJ	PL/J	RF/J	RIIIS/J	SM/J	SWR/J	ZALENDE/EiJ
ss641065851	FVB_NJ_6_50277757	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C57BL/6J	C57BL/10J	C57BL/10SnJ	CE/J	I/LnJ	LG/J	NON/ShiLtJ	PL/J	RF/J	RIIIS/J	SM/J	SWR/J	ZALENDE/EiJ
rs227904224					SNP	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss641065851	FVB_NJ_6_50277757	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:50304738 () rs orientation: forward

Symbol	Name	Function Class
Osbpl3	oxysterol binding protein-like 3	Intron
Rr629982	regulatory region 629982	1975 bp distal
Rr629983	regulatory region 629983	989 bp distal
Rr629984	regulatory region 629984	1097 bp proximal