rs227902193 SNP Detail

Summary

• ID
  rs227902193
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:100688977 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTTCTGTA AGGCAAAAGA
  CACTGTCAAT AGGGCAAAAC GGCAACCAAC AGATTGGGAA AAGATCTTTA CCAATCCTAA
  ATCCAATAGA GGGCTAGTAT CCAATATATA CAAAGAACTC AAGAAGTTAG ACTCCAGACA
  ATCCAATAAC CCTACTAAAA ATGGGGTACA GAGCTAAACA GTTCTCAACT GGGGAAACTC
  R
  AATGGCTGGG AAACACCTAA AGAAATGTTC AACATCCTTA GTCATCAGGG AAATGCAAAT
  CAAAACAACC CTGAGATTCC ACCTCACATC AGTCAGAATG GCTAAAATAA AAAACTCAGG
  TGACAGCAGA TGCTGGCAAG GATGTGGAGA AAGAGGAACA CTCTTCTATT GTTGGTGGGA
  TTGCAAGCTG GTACAACCAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321228025	CHEV_4_100504385	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227902193					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:100688977 () rs orientation: forward

Symbol	Name	Function Class
Cachd1	cache domain containing 1	Intron
Rr596037	regulatory region 596037	1928 bp proximal