rs227886388 SNP Detail

Summary

• ID
  rs227886388
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:127506212 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCCCCCACT CCCAGTCTGC
  CTGTTTAAAG AACTGGGATA GACAGAGCAT CTGGTATGGG CAAGGAAGCA TGGGGCTTGA
  TGTATGAATA GAAGTTTTCT AGGAAGACAG GAAGTATAAA GAGAGATAAA ATTTGCTTGC
  GTGAAGGTAT GAAACAGCCA AATGTTTCAG AAGCTAGAGG TTCATGTTCA CTGTGGGTGG
  R
  GCTATGAGAA ATGATGGCGT GTAAGTCCAA TACACTAAGT TTGCACAGAT GTCTGGGCCA
  CCTGTGTACA ATGCCCAAAG AAGCCAGAAG AGGGTGTTCT GGTATTGAAG TTAACAGTTG
  TGAGCCCTTT GGCCTCTGGG AAACAGCTCA AGTCTTCTGG AAGAAGTGGT GTTCTTAACT
  GCAGAGTCAT CTCTTCAGTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss382189923	MGP_WTSI_10_127107399	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227886388					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382189923	MGP_WTSI_10_127107399	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:127506212 () rs orientation: forward

Symbol	Name	Function Class
1700012D01Rik	RIKEN cDNA 1700012D01 gene	1492 bp downstream
Gm16230	predicted gene 16230	1992 bp downstream
Rr369095	regulatory region 369095	1341 bp downstream
Rr440993	regulatory region 440993	within coordinates
Rr440994	regulatory region 440994	80 bp proximal
Rr440995	regulatory region 440995	1015 bp proximal
Rr440996	regulatory region 440996	1100 bp proximal
Rr440997	regulatory region 440997	1317 bp proximal
Tssr96241	transcription start site region 96241	1934 bp downstream
Tssr99819	transcription start site region 99819	1754 bp upstream
Tssr99820	transcription start site region 99820	1460 bp upstream