rs227875001 SNP Detail

Summary

• ID
  rs227875001
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148245043 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCCAGTAG TCCGACTCCA
  TATGTCCTCC TGCAGTCATC CTCCAGGCAC ACTAGAAGCC CACCCATTCT GTAGCTGTCC
  CTGCCCCTCT CCAGTCCCAG GCTCCTCCCG GAAGCCGCAC CTTGGGTTAC GGGGCGGGGG
  GTGGGGGTGG GGGGGTACAG GACTCCCAGC CCTTAGCCGG GGGCCAGAGG CGGGGCGCAC
  S
  GGGCCTTTAA GAGGCGCGGC GGCGCGGGCC CGGCTGACGC GGGCAGCTCC AGGACTCGCC
  ACCCGCAGCG CTCAGGCTCT TCTCTCTTGA CAGCACCGCA GCGATGGATG GAGATGGTGA
  TCCAGGTATC CGCTGCTGGC CCCGCTAGAT ACAGACTCGG GAGACAGGGC GGACCAGCGC
  CGCAGAAGGC GCTCAAACTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321417740	CHEV_4_147534695	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227875001					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148245043 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15295	CpG island 15295	within coordinates
Fbxo2	F-box protein 2	Intron
Fbxo44	F-box protein 44	380 bp upstream
Rr398857	regulatory region 398857	257 bp downstream
Rr604608	regulatory region 604608	within coordinates
Rr604609	regulatory region 604609	46 bp proximal
Tssr40263	transcription start site region 40263	390 bp downstream
Tssr40264	transcription start site region 40264	27 bp upstream
Tssr40265	transcription start site region 40265	45 bp upstream
Tssr40266	transcription start site region 40266	70 bp upstream
Tssr44596	transcription start site region 44596	984 bp upstream
Tssr44597	transcription start site region 44597	767 bp upstream
Tssr44598	transcription start site region 44598	749 bp upstream
Tssr44599	transcription start site region 44599	656 bp upstream
Tssr44600	transcription start site region 44600	514 bp upstream