rs227862308 SNP Detail

Summary

• ID
  rs227862308
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:135899793 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGCGGGAGA TCCGAATTTG
  GCGGCATATA GTTTGGCGCT AAAAAAAAAA AAAAAGAAAA AAAAAAGAAA AAGAAAGAAA
  AAAGAAGAAA GAAAAGAAAA AGGAGTCCAA GCAAGGGACG GGAACTAGAG GGGTGAACGC
  AGAGCTCAGC AGGGCGCACA GGACACCCTT CGCGGGTCAG AGCACACGAG TGTCCGCGGG
  S
  TCCGTGGGCA TTCCGGGACG CTTTCACGCA CGGGCGCGAC TCCGGACGCC CAGATATTCG
  GGGCACGAGC CGGACCGGGC CAACTCCTGG CAGTGCCACC TGTGCCACGC GATCTCCGAG
  TGGCGATCTC CGAGCTCGGC AGCGCTGGGC GGCGGGCCAG GAGGGGAGGG TCCGGCCTTG
  CCCGGCGGGC GTCCATTGGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363384774	MGP_WTSI_4_135728397	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227862308					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363384774	MGP_WTSI_4_135728397	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135899793 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15100	CpG island 15100	within coordinates
E2f2	E2F transcription factor 2	mRNA-UTR
Rr367754	regulatory region 367754	28 bp downstream
Rr602302	regulatory region 602302	78 bp distal
Tssr39670	transcription start site region 39670	194 bp downstream
Tssr39671	transcription start site region 39671	87 bp downstream
Tssr39672	transcription start site region 39672	55 bp downstream
Tssr39673	transcription start site region 39673	40 bp downstream
Tssr39674	transcription start site region 39674	76 bp upstream
Tssr39675	transcription start site region 39675	184 bp upstream
Tssr39676	transcription start site region 39676	368 bp upstream
Tssr39677	transcription start site region 39677	463 bp upstream
Tssr39678	transcription start site region 39678	685 bp upstream
Tssr44029	transcription start site region 44029	159 bp upstream
Tssr44030	transcription start site region 44030	119 bp downstream
Tssr44031	transcription start site region 44031	556 bp downstream