rs227848653 SNP Detail

Summary

• ID
  rs227848653
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:41519687 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCCGGGGCA CGAGCCTACG
  CGGCACGTGG GCAGGTGCTG GTTGGCCCCA GGGCCAACTT TTGCAGCCCG CCCTCCCGCG
  CAGGCAAGAG GTGGCCGGCG CAGAGACGGG GCCGGGCGGC GGCCCCAAGG CGGTTCCTTG
  TCGCTGCCCG AGCGTCGCCT AACGGTCCCA GGCGCTTCGG GTCCGCGCGG GGGTGGCCCG
  S
  CCCCGTCCCC ACGCCGGAGT CCCGCACAAA GCCCGCGGCG CGGGGTGGCC GCCGCCCGTC
  GCCGTCCCTG TTCCCGCGTC GCGGCGGCCG CAGGCGTTTG TTTGTTGCTT GCGCGCCGCC
  CTGCGCGCCG GATGGCTTCC TGTGACAGAG GTGATCCACA GTTTCCAGAA CTGTCTGGGG
  GCGGGAGCGC GAGCCGAGCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss357685345	MGP_WTSI_3_41369174	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227848653					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357685345	MGP_WTSI_3_41369174	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:41519687 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13118	CpG island 13118			954 bp distal
Cpgi13119	CpG island 13119			within coordinates
Gm31266	predicted gene, 31266			1915 bp upstream
Jade1	jade family PHD finger 1			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr575965	regulatory region 575965			1635 bp distal
Rr575966	regulatory region 575966			1883 bp distal
Rr575967	regulatory region 575967			1064 bp distal
Rr575968	regulatory region 575968			1289 bp distal
Rr575969	regulatory region 575969			322 bp distal
Rr575970	regulatory region 575970			within coordinates
Rr575971	regulatory region 575971			31 bp distal
Rr575972	regulatory region 575972			520 bp proximal
Rr575973	regulatory region 575973			917 bp proximal
Rr575974	regulatory region 575974			928 bp proximal
Tssr29002	transcription start site region 29002			1860 bp downstream
Tssr29003	transcription start site region 29003			1786 bp downstream
Tssr29004	transcription start site region 29004			346 bp downstream
Tssr29005	transcription start site region 29005			319 bp downstream
Tssr29006	transcription start site region 29006			244 bp downstream
Tssr33082	transcription start site region 33082			257 bp downstream