rs227814183 SNP Detail

Summary

• ID
  rs227814183
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148916486 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CCACCAAGC CTGGTCTTCA ACTAGGGTGA
  GGACAAAACC TTTCAGGGCA GACAGCTTGC GCTTCTAGCT TGGCTTGCAG GACTCCCTGG
  ATATGGtttt ctttttcttt ttctcttcct ttttcttttt ctttttcttt ttcttttttc
  Y
  ttttctGgtg tttttgagac agggtttctc tgtgtagtct tggctgtcct ggaactcact
  ctgtagacca ggctggcctc aaactcagaa atccgcctgc ctctgcctcc caagtgctgg
  gtttaaaggc atgcgccgct gccaccacca                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321423193	CHEV_4_148206138	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227814183					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148916486 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Casz1	castor zinc finger 1			Intron
				Noncoding-Transcript-Variant
Rr377397	regulatory region 377397			679 bp downstream
Rr604769	regulatory region 604769			1246 bp distal
Rr604770	regulatory region 604770			1076 bp proximal