rs227810030 SNP Detail

Summary

• ID
  rs227810030
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:108869501 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTCCCCAG GGCTTGTACA
  TGCTAGGCAA GTGCTCTACC ACCGAGCCCC ACTTCCAGCC CTTGGCTTTT ACTTACATTT
  TGAGTTTGTG TTCACCTCCC AGCTTTGATA AACACATTTC TTTGCACATT AGAAGGTTTC
  TTAACATTCC CAACCAGGGA TCAGCATAGT TCTTGTAGGG AACCTTTAGC ATTTAGTACC
  Y
  CCCCCCCCCC CCACCCCCGC ATCATAGCTC TCCAACTCTG CTTGAGCTGA GGCATAACGT
  AATTTTATGT TTAACATAAG CATGCAGTAC TTCCAGTTTG GAAGCATCGT CCAAAGCAGC
  TGTTGGATTT AGTTTGTCAT AGTCTGCTCT TTCCTCTTAG GGGCTCTCAG TATGCACAGT
  GCAGGCGCTC TACCATTGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	BALB/cJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	FVB/NJ	JF1/MsJ	LG/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359177009	MGP_WTSI_3_108765103	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	BALB/cJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	FVB/NJ	JF1/MsJ	LG/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227810030					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359177009	MGP_WTSI_3_108765103	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:108869501 () rs orientation: forward

Symbol	Name	Function Class
Gm65815	predicted gene, 65815	278 bp upstream
Henmt1	HEN1 methyltransferase homolog 1 (Arabidopsis)	Noncoding-Transcript-Variant
Rr583357	regulatory region 583357	46 bp distal