rs227809271 SNP Detail

Summary

• ID
  rs227809271
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:139223174 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCCTTTAA ATCCCAAATG
  GCTATCTGTG TTCCTAGGCT ATTGTCTATG GTGATGCTAA TGTGCCTGAA ATGGTAGAAT
  AAGGTGCACC AACTCATTTT ATAGAGAATA GTGTTTTAAG GAGAACCATG GCAACAAACA
  TGAGAATTTC TTGGCAACCC ACTTATAGGA GAGGGGAGTG TAAGAAAGGG AGGAAAAGAG
  Y
  TGCAAAGGGC GATTCTAGGC GAGCAATCTC TACTGTTGGA AGCAAAAGAA AGGGATGGGT
  TTTGGAAGTA GGAGTCAAAC CCCATGACCT TCTTGTCTCC TTGAGAACAA AAGCACCTTC
  CTAGGGTGGT TTTAGTATCA AATGGAAAGT TCTTGCCCCT TTGTTTTCAT TGAAAGGCTT
  ATGAATATTA ATCGGAAGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320527002	CHEV_2_139206990	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227809271					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:139223174 () rs orientation: forward

Symbol	Name	Function Class
Rr566017	regulatory region 566017	430 bp proximal
Rr566018	regulatory region 566018	592 bp proximal