rs227794184 SNP Detail

Summary

• ID
  rs227794184
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132485616 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAACTTGATG AACACAGGAG
  AAAACAGGTT GTGTGGGAGG TGGGAGAGGA GCGTTAGTGA GGCAGGAGGA AGAGTGGAGG
  GGGAAGAGTT TTGCAAAGAG TGATGGGGGC TTCTGAGGCT CTGAAGCAGG CAGGAGCCAG
  GCTGTGCTTA GATGTTTGAG CTGGGAGCTT TGGGAAGCCA AGAAGAGGAT CAGAGGCAAA
  A
  TTGAGGCTGG AGAGATGGCT CAGCAGTTAA GAACACTGGC TGCTCTTGCA GAGGACTCAG
  GTTTGGTTTC CATCAACTAC ATAGAGGGTA AAGGCGGTCT TTAACTCCAG TTCCAGGGCA
  TTCAGTGCCA CTACACACAC AGTGCCATAG TGCATGCATA TATATATATA TTATATATGC
  ATGCATATAT ATGTGTGTGT                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321336240	CHEV_4_132314220	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227794184					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132485616 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14971	CpG island 14971	974 bp distal
Gm70165	predicted gene, 70165	within coordinates
Rr601063	regulatory region 601063	1064 bp distal
Rr601064	regulatory region 601064	790 bp distal
Smpdl3b	sphingomyelin phosphodiesterase, acid-like 3B	1058 bp upstream
Tssr43702	transcription start site region 43702	1198 bp upstream
Tssr43703	transcription start site region 43703	1153 bp upstream
Tssr43704	transcription start site region 43704	1118 bp upstream
Tssr43705	transcription start site region 43705	1065 bp upstream
Tssr43706	transcription start site region 43706	1046 bp upstream