rs227787716 SNP Detail

Summary

• ID
  rs227787716
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:54824307 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCGTGACAGC TCGTTGTTCA
  CCAGTGCCTA GCTCCTGGAT TACACTGTTT CTGTCCACGT TTATTGGTTT TCCAGGTAGA
  GACAGGCATG GGGCCTAACT CTGAGACACC GTTGTGATAA AAGCTATGCT GTCTCTGTTC
  TGCTTGTCCT GGGCATGTGA GTCTTTTCTA TGTGGATATG CGTGTGCCTC ACTTAAGATG
  M
  GGGGGAGGGG GACGTGTGGT GGAACTGAAC ATGGAGCTCA GATGGTGGAG CACTCGAACA
  GCTAGAGACT TTGGAGTCCA CTCCCAGCAC CACATAAACT CAGCATGGTG GCACTTACTT
  GTACTCCCAA CACTTTAAAG GTGGAGACAG AGTTCAAGGC CATCTTTAGC TATGGAGCCA
  GGACCAAGGT AGCCTTGTCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358019087	MGP_WTSI_3_54720808	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	C	A	A	A	A	A	C	A	A	A	A	A	A	C	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227787716					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	C	A	A	A	A	A	C	A	A	A	A	A	A	C	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358019087	MGP_WTSI_3_54720808	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:54824307 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13182	CpG island 13182	719 bp distal
Gm31358	predicted gene, 31358	within coordinates
Rr576863	regulatory region 576863	1866 bp distal
Rr576864	regulatory region 576864	1365 bp distal
Rr576865	regulatory region 576865	1045 bp distal
Rr576866	regulatory region 576866	869 bp distal
Rr576867	regulatory region 576867	983 bp distal
Rr576868	regulatory region 576868	457 bp distal
Sertm1	serine rich and transmembrane domain containing 1	999 bp upstream
Tssr33288	transcription start site region 33288	1059 bp upstream
Tssr33289	transcription start site region 33289	1002 bp upstream
Tssr33290	transcription start site region 33290	865 bp upstream