rs227782007 SNP Detail

Summary

• ID
  rs227782007
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:132482681 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCAAG CAAGTTCTCC TCTGATCTCC
  R
  CACAGTGTGT GTGTAGGCAT GATAT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321336203	CHEV_4_132311285	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227782007					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132482681 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14971	CpG island 14971	1533 bp proximal
Rr601061	regulatory region 601061	815 bp distal
Rr601062	regulatory region 601062	616 bp distal
Rr601063	regulatory region 601063	1167 bp proximal
Rr601064	regulatory region 601064	1872 bp proximal
Smpdl3b	sphingomyelin phosphodiesterase, acid-like 3B	Intron
Tssr43702	transcription start site region 43702	1734 bp downstream
Tssr43703	transcription start site region 43703	1737 bp downstream
Tssr43704	transcription start site region 43704	1792 bp downstream
Tssr43705	transcription start site region 43705	1859 bp downstream
Tssr43706	transcription start site region 43706	1878 bp downstream