rs227769848 SNP Detail

Summary

• ID
  rs227769848
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:62579027 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ATCTAAGTA ACTGGGAACC GAAGGGATCA
  GATTTCAGCC CCCCTCCTCC CACTCCCTCT CCGCAGAGCA TTCTTTTCCC CAGCTCCACT
  GCTTTTCTGG CTGCCTCCAG ACCTCCTGCC CTCCCTCCCT CCACTGCTGG CCAGGCTGAG
  R
  GCAGACTGCT TTATGTTAGG ACTCGGCCAT CTTTCTTCTC TTTTTTTTAA CTCTTAAGGA
  ACAGAGAACA ACCTGCCTCT GTGCTCTGTC TTACTTTCCT TTTGCTCCAA GCTAGTCTCT
  AGAAAGGCTG CCACTCCCCA GCCATTGAGT                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321142890	CHEV_4_62321824	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227769848					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:62579027 () rs orientation: forward

Symbol	Name	Function Class
Gm52741	predicted gene, 52741	within coordinates
Rgs3	regulator of G-protein signaling 3	Intron
Rr398306	regulatory region 398306	723 bp upstream
Rr593377	regulatory region 593377	within coordinates
Rr593378	regulatory region 593378	832 bp proximal