rs227764533 SNP Detail

Summary

• ID
  rs227764533
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:151967600 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTGGTTTTT GTTTTGtttt gtttgttttc
  gagacagggt ttctctgtat aaccctggct gtcctggaac tcactctgga gaccaggttg
  gcctcaaact cagaaatccc cctgcctctg cctcccagtc ctgggattaa aggcgtgcac
  Y
  accaccccag gTCTTAAATT CTTTTCCCTC TCTTTTTCAA CATCAAAGGC TAATATTACA
  TTGTTCGTGA AACTCAACTG GATTGCCTTT TTCTTTTATA ACGTACCTAT ATTTTAGTTT
  ATTTTTCTTT CTGTAATCTG TATTTGTCGC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320062300	CHEV_1_153938979	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227764533					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:151967600 () rs orientation: forward

Symbol	Name	Function Class
1700025G04Rik	RIKEN cDNA 1700025G04 gene	mRNA-UTR
Cpgi853	CpG island 853	598 bp distal
Rr420417	regulatory region 420417	1735 bp distal
Rr420418	regulatory region 420418	1234 bp distal
Tssr14207	transcription start site region 14207	1682 bp upstream
Tssr14208	transcription start site region 14208	1640 bp upstream
Tssr14209	transcription start site region 14209	1595 bp upstream
Tssr14210	transcription start site region 14210	1542 bp upstream
Tssr14211	transcription start site region 14211	1517 bp upstream