rs227747627 SNP Detail

Summary

• ID
  rs227747627
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:138109636 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    tattcgtat atattacata tGATTAAAAA
  CACACAAACA CAAACAATGA AAGCTATTTC TTTGTATTCT TCTAACATTA CCCATAATTA
  TTATATTTCA CATTTATGAT AGTTTCTCTA GCTATTTCTA TTCTCTCTCT CTCTCtcttt
  R
  ttattgagat gtgttctcat gtaagaccgg atggactcga gcttcttatc tagttgaagt
  tggcctggaa AAATTTTAAA AAGATTTTAT TTATTAACTT Atttttattt tgagttagta
  cctcactatg cctacctaag ctgcctggaa                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321372971	CHEV_4_137938240	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227747627					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138109636 () rs orientation: forward

Symbol	Name	Function Class
Rr602902	regulatory region 602902	1836 bp distal
Rr602903	regulatory region 602903	325 bp proximal
Rr602904	regulatory region 602904	1395 bp proximal