rs227737471 SNP Detail

Summary

• ID
  rs227737471
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132253258 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCCTGGTCC AGTCTCTGTG
  CATCTGGACT TCTCTTTGGC TATGTGAAAA GTTGAGTTCA AGGCCAGCCT GGGATATATG
  AGACCTGTCT CACACACACA CACACACACA CACACACACA CACACACCCA CACACACAAC
  CTAGGGTTTT GTTTTTTTTT CTGTTCTTTT TAACCTAGAA CATTAGAATA TGTAACAATG
  Y
  TTATAGGGCC CAGGGCTCTC TCTGTAAGAA TTGGGCAAAG AAACCTGGGC GGTGGTGTAA
  GAATTGGGCA AAGAAACCTG GGCGGTGGTG ACGCACGCCT TTAATTCCAA CACTTGGGAG
  GCAGATGCAG GCGGATTTCT GAGTTTGAGG CCAACCTGAT CTACAAAGTG AGTTCCAGGA
  CAGCCAGGGC TATACAGGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321334102	CHEV_4_132081862	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227737471					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132253258 () rs orientation: forward

Symbol	Name	Function Class
Gm68741	predicted gene, 68741	within coordinates
Rr377208	regulatory region 377208	527 bp downstream
Rr377209	regulatory region 377209	1201 bp upstream
Rr601000	regulatory region 601000	788 bp distal
Rr601001	regulatory region 601001	833 bp proximal
Rr601002	regulatory region 601002	925 bp proximal