rs227708737 SNP Detail

Summary

• ID
  rs227708737
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr14:100523396 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTACCGGGG CACGCCGGGG
  CGCCTAAGCA AGCTGGCCAT TTAGGAAAGC AGTGAAAGAG GACAGGAGGC TCCAGCTGAG
  CTGGGACCCC AGCCAGGGCG GCGGGGACAT GAGTAGGGAC AGATCGGTGC TCCGTCCTCG
  GAGGGGAGCC CGGTGCTGGA CGCCATCCCT GCAGCCCCGC CTGCGCGCAC GGAGCAGTGG
  R
  TTCGCGGGAT TCTGGGCGGG GAGAGGGAGG AGGCGGCTCG GCTGTTCCCT CCGCGGCTGA
  GAGGACTCCG GGTCAAGCCT CCCGGGAGGG TCGGAGGGGG CGGGCAGTGG AGGAAGCGGA
  AAGGGCCCGG CGGGGTGCAG GGTTAGGGCT TACCCCGGGC AGTCCTGGAG GGTCGGGGCA
  CTATGGGTAC CACTTTCTTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss392224848	MGP_WTSI_14_100685179	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	G	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227708737					SNP	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	G	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss392224848	MGP_WTSI_14_100685179	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:100523396 () rs orientation: forward

Symbol	Name	Function Class
Gm41231	predicted gene, 41231	within coordinates
Klf12	Kruppel-like transcription factor 12	Intron
Rr496738	regulatory region 496738	1292 bp distal
Rr496739	regulatory region 496739	within coordinates
Rr496740	regulatory region 496740	607 bp proximal
Tssr126898	transcription start site region 126898	768 bp downstream
Tssr130012	transcription start site region 130012	1738 bp upstream
Tssr130013	transcription start site region 130013	1462 bp upstream
Tssr130014	transcription start site region 130014	1271 bp upstream
Tssr130015	transcription start site region 130015	1232 bp upstream
Tssr130016	transcription start site region 130016	1111 bp upstream
Tssr130017	transcription start site region 130017	1081 bp upstream
Tssr130018	transcription start site region 130018	1018 bp upstream
Tssr130019	transcription start site region 130019	968 bp upstream