rs227672330 SNP Detail

Summary

• ID
  rs227672330
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:180085494 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAGTCACC TGGAAATAAG
  GTTGAATCCA ACTTCTGATC CACTCCCACT TCTCATGCCC AGGAGGTATC TGAGAGGATC
  TATGATGCTC TTGGCTTCAC CTATAGCTTG TGATCCAAAA GTGAGTCCTG GGCACAACCT
  TGGATTCACT ACTGCCTTTT CACTCCTTGT GACCTGTCAC CATCATCATT GCAATCATTG
  Y
  CACCATTATT ATCAACAGCA TCACCATCCT CACTATCACC ATCATCAGCA CACTTTGCCT
  GAAAAGAAAG AGCAGATCTC AGTTCAGTAG GAACAGACTT CAGCTCCCCA AGCTCATGGT
  CTGAATGTGC CCAGGAAGGA GAAACACCCT TCCTCTCCCC CTCCTTACCA CAAGAGAGTT
  AAGAGAGTTA AGTTCAGGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320632134	CHEV_2_180178406	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227672330					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:180085494 () rs orientation: forward

Symbol	Name	Function Class
Gm75546	predicted gene, 75546	within coordinates
Rr397580	regulatory region 397580	12 bp upstream
Rr572757	regulatory region 572757	1417 bp proximal
Tssr22237	transcription start site region 22237	1424 bp downstream
Tssr22238	transcription start site region 22238	637 bp downstream
Tssr22239	transcription start site region 22239	340 bp upstream
Tssr28110	transcription start site region 28110	114 bp downstream
Tssr28111	transcription start site region 28111	185 bp downstream