rs227666057 SNP Detail

Summary

• ID
  rs227666057
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:155380030 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGGAATTC TGGGACTTGA
  CTCTGCGAGA GCAACCACTC TGCATATTGA GAGATATCTC CAGGGATAGA CTGAGCTCTA
  TCAGCAGCCT CTCGAATCTT TTGGGGGAAA GGTCTTGATA TATAGCCCAG GCTTGTCTTA
  GCCTCAGTGC TGTGCTTACA GGTCTGTCAG GAGAGTCACT CTTACCAGGG GCCAGGAAAG
  R
  GGAACTGCTG ACCAAAGATA GCATGGACTT ACCAATATGG ACTGGACTGA GACCTCATGC
  GTATGTTTCT TAGGGGAGCT ACCAAAACTG TACCAATAGC TCTCCCTCCC CTTATCTTAT
  TTTTTCTGAG ACAGGGTCTT TCTATGTAGC CTTGCTGGCT TGGAATTTGC TACGTTGAAC
  AGGCTGGCCA CAAAAAAAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321441567	CHEV_4_154669682	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227666057					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:155380030 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Prkcz	protein kinase C, zeta			Intron
				Noncoding-Transcript-Variant
Rr606443	regulatory region 606443			104 bp proximal
Rr606444	regulatory region 606444			679 bp proximal
Rr606445	regulatory region 606445			1420 bp proximal
Rr606446	regulatory region 606446			1717 bp proximal