rs227659710 SNP Detail

Summary

• ID
  rs227659710
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:96982384 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGGAAACA GAGGTTTGGT
  CTGGGGTGAC AGGAAAGAAG CAAGCATTGT GATGCCCCAC CCATCCAAAG TTGTGCTCCA
  GGACCTGTGC CCTAGCACTT TCAATGCCCA GCTACAAGGC AACCCAATGC CCCACCCATC
  CAAAGTTGTG CTCCAGGACC TGTGCCCTAG CACTTTCAAT GCCCAGCTAC AAGGCAATCC
  A
  ATGCCCCACC CATCCAAAGT TGTGCTCCAG GACCTGTGCC CTAGCACTTT CAATGCCCAG
  CTACAAGGCA ACCCTTCTAT GGTGTCTTCA GGCTGGAGCT ATTTGAAAGC CCTTTGTTTA
  CAGTTATCAC TGTTGGGAGG AGTGGGAAGG CCACAGGAAG AGAAAGCTGA AAGGAGGTGT
  GGGTGCCTGA GGAAAACCAC                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	FVB/NJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ
ss372444495	MGP_WTSI_7_104481687	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	FVB/NJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ
rs227659710					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss372444495	MGP_WTSI_7_104481687	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:96982384 () rs orientation: forward

Symbol	Name	Function Class
Kctd21	potassium channel tetramerisation domain containing 21	Intron
Rr400445	regulatory region 400445	785 bp downstream
Rr651402	regulatory region 651402	1168 bp distal
Rr651403	regulatory region 651403	840 bp distal
Rr651404	regulatory region 651404	844 bp distal
Rr651405	regulatory region 651405	within coordinates
Tssr67964	transcription start site region 67964	846 bp downstream
Tssr67965	transcription start site region 67965	526 bp downstream
Tssr73573	transcription start site region 73573	1082 bp upstream
Tssr73574	transcription start site region 73574	1063 bp upstream
Tssr73575	transcription start site region 73575	1035 bp upstream
Usp35	ubiquitin specific peptidase 35	1157 bp upstream