rs227658682 SNP Detail

Summary

• ID
  rs227658682
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:54479015 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCCCTCAGG GATGAGAAGC
  CCAAATAATT TTTTTTTTCT TCTAAAAGTC ATCTTGCTCA TGTTGTTTTA TCACAGCAAC
  TAGTGGGGGT GGGGGTGGGG GTGGGGCGGG GATTCTGGGT ATTTGGCTTT GGTTTGGTGG
  ATTGTTTGGC CCTGTTGCTG AGGCTGCAGT TCAGTGAGAA GAAATGAAGG AAAGTCAACT
  S
  AGCTCCTTCT CCCCTTAGCT TCCCTCAGAA GGCCGGCTTC TCATCAGGGG ATAGGGCCCA
  GAGGCCACGC AGCACCAGAC AGAAAAAGGG GAGGGCTTGT TTTATGTCAC CTCCTTTGAC
  TGCTGCTTTA TCTTATTTCT GTTGGTTCCC AAGTAATGGC ATCACTCACT TTTAGGGTGC
  CATATCTTTT TTTTTCCTCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320771974	CHEV_3_54375516	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227658682					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:54479015 () rs orientation: forward

Symbol	Name	Function Class
Gm65161	predicted gene, 65161	within coordinates
Rr576809	regulatory region 576809	892 bp distal
Tssr29130	transcription start site region 29130	1677 bp downstream