rs227635550 SNP Detail

Summary

• ID
  rs227635550
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:62738548 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GGGGGGAAG GAGGAGGAGG TTGTAAAGTC
  CTCCTTGAAC CAGATGTTGG ATAAAACGGT GGAACGGAAG ATGAAGGAGA TCCTCTACTG
  GTTTGGCAAC AGCACCCACC GAACTAAGGC AAATTATACT CTCTTGCTGC TGCAGATGTG
  Y
  GACTCAAATT TACTGCTCAC TGCTGCCAAT GTGATCAGAG TCCTGTTCAT GAAAGAGTGG
  AACAGTATTT CAGGTGAGAG CAGAGGGCCC CAGAGACCAG ACACAGGCTT GGAAGGGGGC
  ATAGGTGCAG ACAGACAGGC TTGGAAAGGC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323704656	CHEV_11_62661224	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227635550					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:62738548 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Fbxw10	F-box and WD-40 domain protein 10			Coding-Synonymous
				Noncoding-Transcript-Variant
Rr386163	regulatory region 386163			661 bp downstream
Rr448938	regulatory region 448938			580 bp distal
Tssr102067	transcription start site region 102067			635 bp downstream
Tssr102068	transcription start site region 102068			619 bp downstream
Tssr102069	transcription start site region 102069			590 bp downstream